Computational Genomics

Prediction of Transcription Factors in Prokaryotes

Last update (mm/dd/yyyy): 12/17/2014

These predictions are based on Hidden Markov Models for different DNA binding domains.

Please cite appropriately:

Marc del Grande and Gabriel Moreno-Hagelsieb (2014) The loose evolutionary relationships between transcription factors and other gene products across prokaryotes. BMC Research Notes 2014, 7:928, doi:10.1186/1756-0500-7-928

The format:

  1. NCBI's GI
  2. Locus Tag
  3. Gene name
  4. Protein ID
  5. Gene ID
  6. Pfam
  7. Superfamily
  8. Curated database. For E. coli K12 MG1655 (uid57779) and B. subtilis 168 (uid57675) only.
ENJOY!
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  2729. uid89391.TFs.bz2
  2730. uid89393.TFs.bz2
  2731. uid89395.TFs.bz2
  2732. uid89409.TFs.bz2

Computational Genomics