Table of Genome Redundancy

Redundant genomes are those containing a name of a representative genome ("Represented by" column).
The order of elimination obeys importance as model organisms (E. coli K12, B. subtilis), then importance by the highest number of genes having orthologs across phyla.
Organism Abbreviation Represented by GenBank Versions
Phylum: Acidobacteria
Acidobacteria bacterium Ellin345 A. bacterium Ellin345 - NC_008009.1
Solibacter usitatus Ellin6076 S. usitatus Ellin6076 - NC_008536.1
Phylum: Actinobacteria
Acidothermus cellulolyticus 11B A. cellulolyticus 11B - NC_008578.1
Arthrobacter FB24 Arthrobacter FB24 A. aurescens TC1 NC_008541.1, NC_008537.1, NC_008538.1, NC_008539.1
Arthrobacter aurescens TC1 A. aurescens TC1 - NC_008711.1, NC_008712.1, NC_008713.1
Bifidobacterium adolescentis ATCC15703 B. adolescentis ATCC15703 B. longum NC_008618.1
Bifidobacterium longum B. longum - NC_004307.2, NC_004943.1
Corynebacterium diphtheriae C. diphtheriae - NC_002935.2
Corynebacterium efficiens YS-314 C. efficiens YS-314 C. glutamicum ATCC13032 Bielefeld NC_004369.1
Corynebacterium glutamicum ATCC13032 Bielefeld C. glutamicum ATCC13032 Bielefeld - NC_006958.1
Corynebacterium glutamicum ATCC13032 Kitasato C. glutamicum ATCC13032 Kitasato C. glutamicum ATCC13032 Bielefeld NC_003450.3
Corynebacterium jeikeium K411 C. jeikeium K411 - NC_007164.1, NC_003080.1
Frankia CcI3 Frankia CcI3 F. alni ACN14a NC_007777.1
Frankia alni ACN14a F. alni ACN14a - NC_008278.1
Leifsonia xyli xyli CTCB0 L. xyli xyli CTCB0 - NC_006087.1
Mycobacterium KMS Mycobacterium KMS M. smegmatis MC2 155 NC_008705.1, NC_008703.1, NC_008704.1
Mycobacterium MCS Mycobacterium MCS M. smegmatis MC2 155 NC_008146.1, NC_008147.1
Mycobacterium avium 104 M. avium 104 - NC_008595.1
Mycobacterium avium paratuberculosis M. avium paratuberculosis M. avium 104 NC_002944.2
Mycobacterium bovis M. bovis M. avium 104 NC_002945.3
Mycobacterium bovis BCG Pasteur 1173P2 M. bovis BCG Pasteur 1173P2 M. avium 104 NC_008769.1
Mycobacterium leprae M. leprae M. avium 104 NC_002677.1
Mycobacterium smegmatis MC2 155 M. smegmatis MC2 155 - NC_008596.1
Mycobacterium tuberculosis CDC1551 M. tuberculosis CDC1551 M. avium 104 NC_002755.2
Mycobacterium tuberculosis H37Rv M. tuberculosis H37Rv M. avium 104 NC_000962.2
Mycobacterium ulcerans Agy99 M. ulcerans Agy99 M. avium 104 NC_008611.1
Mycobacterium vanbaalenii PYR-1 M. vanbaalenii PYR-1 M. smegmatis MC2 155 NC_008726.1
Nocardia farcinica IFM10152 N. farcinica IFM10152 - NC_006361.1, NC_006362.1, NC_006363.1
Nocardioides JS614 Nocardioides JS614 - NC_008699.1, NC_008697.1
Propionibacterium acnes KPA171202 P. acnes KPA171202 - NC_006085.1
Rhodococcus RHA1 Rhodococcus RHA1 - NC_008268.1, NC_008269.1, NC_008270.1, NC_008271.1
Rubrobacter xylanophilus DSM9941 R. xylanophilus DSM9941 - NC_008148.1
Streptomyces avermitilis S. avermitilis S. coelicolor NC_003155.3, NC_004719.1
Streptomyces coelicolor S. coelicolor - NC_003888.3, NC_003903.1, NC_003904.1
Symbiobacterium thermophilum IAM14863 S. thermophilum IAM14863 - NC_006177.1
Thermobifida fusca YX T. fusca YX - NC_007333.1
Tropheryma whipplei TW08 27 T. whipplei TW08 27 T. whipplei Twist NC_004551.1
Tropheryma whipplei Twist T. whipplei Twist - NC_004572.3
Phylum: Aquificae
Aquifex aeolicus A. aeolicus - NC_000918.1, NC_001880.1
Phylum: Bacteroidetes
Bacteroides fragilis NCTC9434 B. fragilis NCTC9434 B. fragilis YCH46 NC_003228.3, NC_006873.1
Bacteroides fragilis YCH46 B. fragilis YCH46 - NC_006347.1, NC_006297.1
Bacteroides thetaiotaomicron VPI-5482 B. thetaiotaomicron VPI-5482 B. fragilis YCH46 NC_004663.1, NC_004703.1
Cytophaga hutchinsonii ATCC33406 C. hutchinsonii ATCC33406 - NC_008255.1
Gramella forsetii KT0803 G. forsetii KT0803 - NC_008571.1
Porphyromonas gingivalis W83 P. gingivalis W83 - NC_002950.2
Salinibacter ruber DSM13855 S. ruber DSM13855 - NC_007677.1, NC_007678.1
Phylum: Chlamydiae
Chlamydia muridarum C. muridarum C. trachomatis A HAR-13 NC_002620.2, NC_002182.1
Chlamydia trachomatis C. trachomatis C. trachomatis A HAR-13 NC_000117.1
Chlamydia trachomatis A HAR-13 C. trachomatis A HAR-13 - NC_007429.1, NC_007430.1
Chlamydophila abortus S26 3 C. abortus S26 3 C. felis Fe C-56 NC_004552.2
Chlamydophila caviae C. caviae C. felis Fe C-56 NC_003361.3, NC_004720.1
Chlamydophila felis Fe C-56 C. felis Fe C-56 - NC_007899.1, NC_007900.1
Chlamydophila pneumoniae AR39 C. pneumoniae AR39 C. pneumoniae J138 NC_002179.2
Chlamydophila pneumoniae CWL029 C. pneumoniae CWL029 C. pneumoniae J138 NC_000922.1
Chlamydophila pneumoniae J138 C. pneumoniae J138 - NC_002491.1
Chlamydophila pneumoniae TW183 C. pneumoniae TW183 C. pneumoniae J138 NC_005043.1
Parachlamydia UWE25 Parachlamydia UWE25 - NC_005861.1
Phylum: Chlorobi
Chlorobium chlorochromatii CaD3 C. chlorochromatii CaD3 - NC_007514.1
Chlorobium phaeobacteroides DSM266 C. phaeobacteroides DSM266 - NC_008639.1
Chlorobium tepidum TLS C. tepidum TLS - NC_002932.3
Pelodictyon luteolum DSM273 P. luteolum DSM273 - NC_007512.1
Phylum: Chloroflexi
Dehalococcoides CBDB1 Dehalococcoides CBDB1 D. ethenogenes 195 NC_007356.1
Dehalococcoides ethenogenes 195 D. ethenogenes 195 - NC_002936.3
Phylum: Cyanobacteria
Anabaena variabilis ATCC29413 A. variabilis ATCC29413 Nostoc sp NC_007413.1, NC_007410.1, NC_007411.1, NC_007412.1
Synechococcus JA-3-3Ab Synechococcus JA-3-3Ab Synechococcus JA-2-3Ba NC_007775.1
Synechococcus JA-2-3Ba Synechococcus JA-2-3Ba - NC_007776.1
Gloeobacter violaceus G. violaceus - NC_005125.1
Nostoc sp Nostoc sp - NC_003272.1, NC_003240.1, NC_003241.1, NC_003267.1, NC_003270.1, NC_003273.1, NC_003276.1
Prochlorococcus marinus AS9601 P. marinus AS9601 - NC_008816.1
Prochlorococcus marinus CCMP1375 P. marinus CCMP1375 - NC_005042.1
Prochlorococcus marinus MED4 P. marinus MED4 P. marinus AS9601 NC_005072.1
Prochlorococcus marinus MIT9313 P. marinus MIT9313 P. marinus MIT9303 NC_005071.1
Prochlorococcus marinus MIT9303 P. marinus MIT9303 - NC_008820.1
Prochlorococcus marinus MIT9312 P. marinus MIT9312 P. marinus AS9601 NC_007577.1
Prochlorococcus marinus MIT9515 P. marinus MIT9515 P. marinus AS9601 NC_008817.1
Prochlorococcus marinus NATL1A P. marinus NATL1A - NC_008819.1
Prochlorococcus marinus NATL2A P. marinus NATL2A P. marinus NATL1A NC_007335.1
Synechococcus CC9311 Synechococcus CC9311 - NC_008319.1
Synechococcus CC9605 Synechococcus CC9605 - NC_007516.1
Synechococcus CC9902 Synechococcus CC9902 Synechococcus CC9605 NC_007513.1
Synechococcus elongatus PCC6301 S. elongatus PCC6301 S. elongatus PCC7942 NC_006576.1
Synechococcus elongatus PCC7942 S. elongatus PCC7942 - NC_007604.1, NC_007595.1
Synechococcus WH8102 Synechococcus WH8102 Synechococcus CC9605 NC_005070.1
Synechocystis PCC6803 Synechocystis PCC6803 - NC_000911.1, NC_005229.1, NC_005230.1, NC_005231.1, NC_005232.1
Thermosynechococcus elongatus T. elongatus - NC_004113.1
Trichodesmium erythraeum IMS101 T. erythraeum IMS101 - NC_008312.1
Phylum: Deinococcus-Thermus
Deinococcus geothermalis DSM11300 D. geothermalis DSM11300 - NC_008025.1, NC_008010.2
Deinococcus radiodurans D. radiodurans - NC_001263.1, NC_001264.1, NC_000958.1, NC_000959.1
Thermus thermophilus HB27 T. thermophilus HB27 - NC_005835.1, NC_005838.1
Thermus thermophilus HB8 T. thermophilus HB8 T. thermophilus HB27 NC_006461.1, NC_006462.1, NC_006463.1
Phylum: Firmicutes
Aster asteris P. asteris O. yellows phytoplasma NC_007716.1, NC_007717.1, NC_007718.1, NC_007719.1, NC_007720.1
Bacillus anthracis Ames B. anthracis Ames B. anthracis Ames 0581 NC_003997.3
Bacillus anthracis Ames 0581 B. anthracis Ames 0581 - NC_007530.2, NC_007322.2, NC_007323.3
Bacillus anthracis Sterne B. anthracis Sterne B. anthracis Ames 0581 NC_005945.1
Bacillus cereus ATCC14579 B. cereus ATCC14579 B. anthracis Ames 0581 NC_004722.1, NC_004721.2
Bacillus cereus ATCC10987 B. cereus ATCC10987 B. anthracis Ames 0581 NC_003909.8, NC_005707.1
Bacillus cereus ZK B. cereus ZK B. anthracis Ames 0581 NC_006274.1, NC_007103.1, NC_007104.1, NC_007105.1, NC_007106.1, NC_007107.1
Bacillus clausii KSM-K16 B. clausii KSM-K16 - NC_006582.1
Bacillus halodurans B. halodurans - NC_002570.2
Bacillus licheniformis ATCC14580 B. licheniformis ATCC14580 B. subtilis NC_006270.2
Bacillus licheniformis DSM13 B. licheniformis DSM13 B. subtilis NC_006322.1
Bacillus subtilis B. subtilis - NC_000964.2
Bacillus thuringiensis Al Hakam B. thuringiensis Al Hakam B. anthracis Ames 0581 NC_008600.1, NC_008598.1
Bacillus thuringiensis konkukian B. thuringiensis konkukian B. anthracis Ames 0581 NC_005957.1, NC_006578.1
Carboxydothermus hydrogenoformans Z-2901 C. hydrogenoformans Z-2901 - NC_007503.1
Clostridium acetobutylicum C. acetobutylicum - NC_003030.1, NC_001988.2
Clostridium novyi NT C. novyi NT - NC_008593.1
Clostridium perfringens C. perfringens C. perfringens ATCC13124 NC_003366.1, NC_003042.1
Clostridium perfringens ATCC13124 C. perfringens ATCC13124 - NC_008261.1
Clostridium perfringens SM101 C. perfringens SM101 C. perfringens ATCC13124 NC_008262.1, NC_008265.1, NC_008263.1, NC_008264.1
Clostridium tetani E88 C. tetani E88 - NC_004557.1, NC_004565.1
Clostridium thermocellum ATCC27405 C. thermocellum ATCC27405 - NC_009012.1
Desulfitobacterium hafniense Y51 D. hafniense Y51 - NC_007907.1
Enterococcus faecalis V583 E. faecalis V583 - NC_004668.1, NC_004669.1, NC_004670.1, NC_004671.1
Geobacillus kaustophilus HTA426 G. kaustophilus HTA426 - NC_006510.1, NC_006509.1
Lactobacillus acidophilus NCFM L. acidophilus NCFM - NC_006814.2
Lactobacillus brevis ATCC367 L. brevis ATCC367 - NC_008497.1, NC_008498.1, NC_008499.1
Lactobacillus casei ATCC334 L. casei ATCC334 - NC_008526.1, NC_008502.1
Lactobacillus delbrueckii bulgaricus L. delbrueckii bulgaricus L. delbrueckii bulgaricus ATCC BAA-365 NC_008054.1
Lactobacillus delbrueckii bulgaricus ATCC BAA-365 L. delbrueckii bulgaricus ATCC BAA-365 - NC_008529.1
Lactobacillus gasseri ATCC33323 L. gasseri ATCC33323 L. johnsonii NCC533 NC_008530.1
Lactobacillus johnsonii NCC533 L. johnsonii NCC533 - NC_005362.1
Lactobacillus plantarum L. plantarum - NC_004567.1, NC_006375.1, NC_006376.1, NC_006377.1
Lactobacillus sakei 23K L. sakei 23K - NC_007576.1
Lactobacillus salivarius UCC118 L. salivarius UCC118 - NC_007929.1, NC_006529.1, NC_006530.1, NC_007930.1
Lactococcus lactis L. lactis L. lactis cremoris MG1363 NC_002662.1
Lactococcus lactis cremoris MG1363 L. lactis cremoris MG1363 - NC_009004.1
Lactococcus lactis cremoris SK11 L. lactis cremoris SK11 L. lactis cremoris MG1363 NC_008527.1, NC_008503.1, NC_008504.1, NC_008505.1, NC_008506.1, NC_008507.1
Leuconostoc mesenteroides ATCC8293 L. mesenteroides ATCC8293 - NC_008531.1, NC_008496.1
Listeria innocua L. innocua - NC_003212.1, NC_003383.1
Listeria monocytogenes L. monocytogenes L. innocua NC_003210.1
Listeria monocytogenes 4b F2365 L. monocytogenes 4b F2365 L. innocua NC_002973.6
Listeria welshimeri 6b SLCC5334 L. welshimeri 6b SLCC5334 L. innocua NC_008555.1
Mesoplasma florum L1 M. florum L1 - NC_006055.1
Moorella thermoacetica ATCC39073 M. thermoacetica ATCC39073 - NC_007644.1
Mycoplasma capricolum ATCC27343 M. capricolum ATCC27343 M. mycoides NC_007633.1
Mycoplasma gallisepticum M. gallisepticum - NC_004829.1
Mycoplasma genitalium M. genitalium - NC_000908.2
Mycoplasma hyopneumoniae 232 M. hyopneumoniae 232 M. hyopneumoniae 7448 NC_006360.1
Mycoplasma hyopneumoniae 7448 M. hyopneumoniae 7448 - NC_007332.1
Mycoplasma hyopneumoniae J M. hyopneumoniae J M. hyopneumoniae 7448 NC_007295.1
Mycoplasma mobile 163K M. mobile 163K - NC_006908.1
Mycoplasma mycoides M. mycoides - NC_005364.1
Mycoplasma penetrans M. penetrans - NC_004432.1
Mycoplasma pneumoniae M. pneumoniae - NC_000912.1
Mycoplasma pulmonis M. pulmonis - NC_002771.1
Mycoplasma synoviae 53 M. synoviae 53 - NC_007294.1
Oceanobacillus iheyensis O. iheyensis - NC_004193.1
Oenococcus oeni PSU-1 O. oeni PSU-1 - NC_008528.1
Onion yellows phytoplasma O. yellows phytoplasma - NC_005303.1
Pediococcus pentosaceus ATCC25745 P. pentosaceus ATCC25745 - NC_008525.1
Staphylococcus aureus COL S. aureus COL S. aureus Mu50 NC_002951.2, NC_006629.2
Staphylococcus aureus MW2 S. aureus MW2 S. aureus Mu50 NC_003923.1
Staphylococcus aureus Mu50 S. aureus Mu50 - NC_002758.2, NC_002774.1
Staphylococcus aureus N315 S. aureus N315 S. aureus Mu50 NC_002745.2, NC_003140.1
Staphylococcus aureus NCTC8325 S. aureus NCTC8325 S. aureus Mu50 NC_007795.1
Staphylococcus aureus RF122 S. aureus RF122 S. aureus Mu50 NC_007622.1
Staphylococcus aureus USA300 S. aureus USA300 S. aureus Mu50 NC_007793.1, NC_007790.1, NC_007791.1, NC_007792.1
Staphylococcus aureus aureus MRSA252 S. aureus aureus MRSA252 S. aureus Mu50 NC_002952.2
Staphylococcus aureus aureus MSSA476 S. aureus aureus MSSA476 S. aureus Mu50 NC_002953.3, NC_005951.1
Staphylococcus epidermidis ATCC12228 S. epidermidis ATCC12228 S. aureus Mu50 NC_004461.1, NC_005003.1, NC_005004.1, NC_005005.1, NC_005006.1, NC_005007.1, NC_005008.1
Staphylococcus epidermidis RP62A S. epidermidis RP62A S. aureus Mu50 NC_002976.3, NC_006663.1
Staphylococcus haemolyticus S. haemolyticus S. aureus Mu50 NC_007168.1
Staphylococcus saprophyticus S. saprophyticus S. aureus Mu50 NC_007350.1, NC_007351.1, NC_007352.1
Streptococcus agalactiae 2603 S. agalactiae 2603 - NC_004116.1
Streptococcus agalactiae A909 S. agalactiae A909 S. agalactiae 2603 NC_007432.1
Streptococcus agalactiae NEM316 S. agalactiae NEM316 S. agalactiae 2603 NC_004368.1
Streptococcus mutans S. mutans S. agalactiae 2603 NC_004350.1
Streptococcus pneumoniae D39 S. pneumoniae D39 S. sanguinis SK36 NC_008533.1
Streptococcus pneumoniae R6 S. pneumoniae R6 S. sanguinis SK36 NC_003098.1
Streptococcus pneumoniae TIGR4 S. pneumoniae TIGR4 S. sanguinis SK36 NC_003028.2
Streptococcus pyogenes M1 GAS S. pyogenes M1 GAS S. agalactiae 2603 NC_002737.1
Streptococcus pyogenes MGAS10270 S. pyogenes MGAS10270 S. agalactiae 2603 NC_008022.1
Streptococcus pyogenes MGAS10394 S. pyogenes MGAS10394 S. agalactiae 2603 NC_006086.1
Streptococcus pyogenes MGAS10750 S. pyogenes MGAS10750 S. agalactiae 2603 NC_008024.1
Streptococcus pyogenes MGAS2096 S. pyogenes MGAS2096 S. agalactiae 2603 NC_008023.1
Streptococcus pyogenes MGAS315 S. pyogenes MGAS315 S. agalactiae 2603 NC_004070.1
Streptococcus pyogenes MGAS5005 S. pyogenes MGAS5005 S. agalactiae 2603 NC_007297.1
Streptococcus pyogenes MGAS6180 S. pyogenes MGAS6180 S. agalactiae 2603 NC_007296.1
Streptococcus pyogenes MGAS8232 S. pyogenes MGAS8232 S. agalactiae 2603 NC_003485.1
Streptococcus pyogenes MGAS9429 S. pyogenes MGAS9429 S. agalactiae 2603 NC_008021.1
Streptococcus pyogenes SSI-1 S. pyogenes SSI-1 S. agalactiae 2603 NC_004606.1
Streptococcus sanguinis SK36 S. sanguinis SK36 - NC_009009.1
Streptococcus thermophilus CNRZ1066 S. thermophilus CNRZ1066 - NC_006449.1
Streptococcus thermophilus LMD-9 S. thermophilus LMD-9 S. agalactiae 2603 NC_008532.1, NC_008500.1, NC_008501.1
Streptococcus thermophilus LMG18311 S. thermophilus LMG18311 S. thermophilus CNRZ1066 NC_006448.1
Syntrophomonas wolfei Goettingen S. wolfei Goettingen - NC_008346.1
Thermoanaerobacter tengcongensis T. tengcongensis - NC_003869.1
Ureaplasma urealyticum U. urealyticum - NC_002162.1
Phylum: Fusobacteria
Fusobacterium nucleatum F. nucleatum - NC_003454.1
Phylum: Planctomycetes
Pirellula sp Pirellula sp - NC_005027.1
Phylum: Proteobacteria
Acidovorax JS42 Acidovorax JS42 A. avenae citrulli AAC00-1 NC_008782.1, NC_008765.1, NC_008766.1
Acidovorax avenae citrulli AAC00-1 A. avenae citrulli AAC00-1 - NC_008752.1
Acinetobacter ADP1 Acinetobacter ADP1 - NC_005966.1
Aeromonas hydrophila ATCC7966 A. hydrophila ATCC7966 - NC_008570.1
Agrobacterium tumefaciens C58 Cereon A. tumefaciens C58 Cereon - NC_003062.1, NC_003063.1, NC_003064.1, NC_003065.2
Agrobacterium tumefaciens C58 UWash A. tumefaciens C58 UWash A. tumefaciens C58 Cereon NC_003304.1, NC_003305.1, NC_003306.1, NC_003308.1
Alcanivorax borkumensis SK2 A. borkumensis SK2 - NC_008260.1
Alkalilimnicola ehrlichei MLHE-1 A. ehrlichei MLHE-1 - NC_008340.1
Anaeromyxobacter dehalogenans 2CP-C A. dehalogenans 2CP-C - NC_007760.1
Anaplasma marginale St Maries A. marginale St Maries - NC_004842.2
Anaplasma phagocytophilum HZ A. phagocytophilum HZ - NC_007797.1
Azoarcus BH72 Azoarcus BH72 - NC_008702.1
Azoarcus EbN1 Azoarcus EbN1 - NC_006513.1, NC_006823.1, NC_006824.1
Bartonella bacilliformis KC583 B. bacilliformis KC583 B. henselae Houston-1 NC_008783.1
Bartonella henselae Houston-1 B. henselae Houston-1 - NC_005956.1
Bartonella quintana Toulouse B. quintana Toulouse B. henselae Houston-1 NC_005955.1
Baumannia cicadellinicola Hc B. cicadellinicola Hc - NC_007984.1
Bdellovibrio bacteriovorus B. bacteriovorus - NC_005363.1
Bordetella bronchiseptica B. bronchiseptica - NC_002927.3
Bordetella parapertussis B. parapertussis B. bronchiseptica NC_002928.3
Bordetella pertussis B. pertussis B. bronchiseptica NC_002929.2
Bradyrhizobium japonicum B. japonicum - NC_004463.1
Brucella abortus 9-941 B. abortus 9-941 B. suis 1330 NC_006932.1, NC_006933.1
Brucella melitensis B. melitensis B. suis 1330 NC_003317.1, NC_003318.1
Brucella melitensis Abortus B. melitensis Abortus B. suis 1330 NC_007618.1, NC_007624.1
Brucella suis 1330 B. suis 1330 - NC_004310.3, NC_004311.2
Buchnera aphidicola B. aphidicola - NC_004545.1, NC_004555.1
Buchnera aphidicola Cc B. aphidicola Cc - NC_008513.1
Buchnera aphidicola Sg B. aphidicola Sg Buchnera sp NC_004061.1
Buchnera sp Buchnera sp - NC_002528.1, NC_002252.1, NC_002253.1
Burkholderia 383 Burkholderia 383 - NC_007509.1, NC_007510.1, NC_007511.1
Burkholderia cenocepacia AU1054 B. cenocepacia AU1054 B. xenovorans LB400 NC_008060.1, NC_008061.1, NC_008062.1
Burkholderia cenocepacia HI2424 B. cenocepacia HI2424 B. xenovorans LB400 NC_008542.1, NC_008543.1, NC_008544.1, NC_008545.1
Burkholderia cepacia AMMD B. cepacia AMMD B. xenovorans LB400 NC_008390.1, NC_008391.1, NC_008392.1, NC_008385.1
Burkholderia mallei ATCC23344 B. mallei ATCC23344 B. xenovorans LB400 NC_006348.1, NC_006349.2
Burkholderia mallei NCTC10229 B. mallei NCTC10229 B. xenovorans LB400 NC_008835.1, NC_008836.1
Burkholderia mallei SAVP1 B. mallei SAVP1 B. xenovorans LB400 NC_008784.1, NC_008785.1
Burkholderia pseudomallei 1710b B. pseudomallei 1710b B. xenovorans LB400 NC_007434.1, NC_007435.1
Burkholderia pseudomallei K96243 B. pseudomallei K96243 B. xenovorans LB400 NC_006350.1, NC_006351.1
Burkholderia thailandensis E264 B. thailandensis E264 B. xenovorans LB400 NC_007650.1, NC_007651.1
Burkholderia xenovorans LB400 B. xenovorans LB400 - NC_007951.1, NC_007952.1, NC_007953.1
Campylobacter fetus 82-40 C. fetus 82-40 - NC_008599.1
Campylobacter jejuni C. jejuni C. jejuni 81-176 NC_002163.1
Campylobacter jejuni 81-176 C. jejuni 81-176 - NC_008787.1, NC_008770.1, NC_008790.1
Campylobacter jejuni RM1221 C. jejuni RM1221 C. jejuni 81-176 NC_003912.7
Blochmannia floridanus B. floridanus - NC_005061.1
Blochmannia pennsylvanicus BPEN B. pennsylvanicus BPEN - NC_007292.1
Carsonella ruddii C. ruddii - NC_008512.1
Carsonella ruddii PV C. ruddii PV C. ruddii NC_008512.1
Pelagibacter ubique HTCC1062 P. ubique HTCC1062 - NC_007205.1
Ruthia magnifica Cm R. magnifica Cm - NC_008610.1
Caulobacter crescentus C. crescentus - NC_002696.2
Chromobacterium violaceum C. violaceum - NC_005085.1
Chromohalobacter salexigens DSM3043 C. salexigens DSM3043 - NC_007963.1
Colwellia psychrerythraea 34H C. psychrerythraea 34H - NC_003910.7
Coxiella burnetii C. burnetii - NC_002971.3, NC_004704.1
Dechloromonas aromatica RCB D. aromatica RCB - NC_007298.1
Desulfotalea psychrophila LSv54 D. psychrophila LSv54 - NC_006138.1, NC_006139.1, NC_006140.1
Desulfovibrio desulfuricans G20 D. desulfuricans G20 - NC_007519.1
Desulfovibrio vulgaris DP4 D. vulgaris DP4 - NC_008751.1, NC_008741.1
Desulfovibrio vulgaris Hildenborough D. vulgaris Hildenborough D. vulgaris DP4 NC_002937.3, NC_005863.1
Ehrlichia canis Jake E. canis Jake E. ruminantium Welgevonden Cirad NC_007354.1
Ehrlichia chaffeensis Arkansas E. chaffeensis Arkansas E. ruminantium Welgevonden Cirad NC_007799.1
Ehrlichia ruminantium Gardel E. ruminantium Gardel E. ruminantium Welgevonden Cirad NC_006831.1
Ehrlichia ruminantium Welgevonden Onderstepoort E. ruminantium Welgevonden Onderstepoort E. ruminantium Welgevonden Cirad NC_005295.2
Ehrlichia ruminantium Welgevonden Cirad E. ruminantium Welgevonden Cirad - NC_006832.1
Erwinia carotovora atroseptica SCRI1043 E. carotovora atroseptica SCRI1043 E. coli K12 NC_004547.2
Erythrobacter litoralis HTCC2594 E. litoralis HTCC2594 - NC_007722.1
Escherichia coli 536 E. coli 536 E. coli K12 NC_008253.1
Escherichia coli APEC O1 E. coli APEC O1 E. coli K12 NC_008563.1
Escherichia coli CFT073 E. coli CFT073 E. coli K12 NC_004431.1
Escherichia coli K12 E. coli K12 - NC_000913.2
Escherichia coli O157H7 E. coli O157H7 E. coli K12 NC_002695.1, NC_002127.1, NC_002128.1
Escherichia coli O157H7 EDL933 E. coli O157H7 EDL933 E. coli K12 NC_002655.2, NC_007414.1
Escherichia coli UTI89 E. coli UTI89 E. coli K12 NC_007946.1, NC_007941.1
Escherichia coli W3110 E. coli W3110 E. coli K12 AC_000091.1
Francisella tularensis FSC198 F. tularensis FSC198 F. tularensis holarctica NC_008245.1
Francisella tularensis holarctica F. tularensis holarctica - NC_007880.1
Francisella tularensis holarctica OSU18 F. tularensis holarctica OSU18 F. tularensis holarctica NC_008369.1
Francisella tularensis novicida U112 F. tularensis novicida U112 F. tularensis holarctica NC_008601.1
Francisella tularensis tularensis F. tularensis tularensis F. tularensis holarctica NC_006570.1
Geobacter metallireducens GS-15 G. metallireducens GS-15 - NC_007517.1, NC_007515.1
Geobacter sulfurreducens G. sulfurreducens G. metallireducens GS-15 NC_002939.4
Gluconobacter oxydans 621H G. oxydans 621H - NC_006677.1, NC_006672.1, NC_006673.1, NC_006674.1, NC_006675.1, NC_006676.1
Granulibacter bethesdensis CGDNIH1 G. bethesdensis CGDNIH1 - NC_008343.1
Haemophilus ducreyi 35000HP H. ducreyi 35000HP - NC_002940.2
Haemophilus influenzae H. influenzae M. succiniciproducens MBEL55E NC_000907.1
Haemophilus influenzae 86 028NP H. influenzae 86 028NP M. succiniciproducens MBEL55E NC_007146.1
Haemophilus somnus 129PT H. somnus 129PT M. succiniciproducens MBEL55E NC_008309.1, NC_006298.1
Hahella chejuensis KCTC2396 H. chejuensis KCTC2396 - NC_007645.1
Halorhodospira halophila SL1 H. halophila SL1 - NC_008789.1
Helicobacter acinonychis Sheeba H. acinonychis Sheeba H. pylori 26695 NC_008229.1, NC_008230.1
Helicobacter hepaticus H. hepaticus - NC_004917.1
Helicobacter pylori 26695 H. pylori 26695 - NC_000915.1
Helicobacter pylori HPAG1 H. pylori HPAG1 H. pylori 26695 NC_008086.1, NC_008087.1
Helicobacter pylori J99 H. pylori J99 H. pylori 26695 NC_000921.1
Hyphomonas neptunium ATCC15444 H. neptunium ATCC15444 - NC_008358.1
Idiomarina loihiensis L2TR I. loihiensis L2TR - NC_006512.1
Jannaschia CCS1 Jannaschia CCS1 - NC_007802.1, NC_007801.1
Lawsonia intracellularis PHE MN1-00 L. intracellularis PHE MN1-00 - NC_008011.1, NC_008012.1, NC_008013.1, NC_008014.1
Legionella pneumophila Lens L. pneumophila Lens L. pneumophila Paris NC_006369.1, NC_006366.1
Legionella pneumophila Paris L. pneumophila Paris - NC_006368.1, NC_006365.1
Legionella pneumophila Philadelphia 1 L. pneumophila Philadelphia 1 L. pneumophila Paris NC_002942.5
Magnetococcus MC-1 Magnetococcus MC-1 - NC_008576.1
Magnetospirillum magneticum AMB-1 M. magneticum AMB-1 - NC_007626.1
Mannheimia succiniciproducens MBEL55E M. succiniciproducens MBEL55E - NC_006300.1
Maricaulis maris MCS10 M. maris MCS10 - NC_008347.1
Marinobacter aquaeolei VT8 M. aquaeolei VT8 - NC_008740.1, NC_008738.1, NC_008739.1
Mesorhizobium BNC1 Mesorhizobium BNC1 - NC_008254.1, NC_008242.1, NC_008243.1, NC_008244.1
Mesorhizobium loti M. loti - NC_002678.2, NC_002679.1, NC_002682.1
Methylibium petroleiphilum PM1 M. petroleiphilum PM1 - NC_008825.1, NC_008826.1
Methylobacillus flagellatus KT M. flagellatus KT - NC_007947.1
Methylococcus capsulatus Bath M. capsulatus Bath - NC_002977.6
Myxococcus xanthus DK1622 M. xanthus DK1622 - NC_008095.1
Neisseria gonorrhoeae FA1090 N. gonorrhoeae FA1090 N. meningitidis Z2491 NC_002946.2
Neisseria meningitidis FAM18 N. meningitidis FAM18 N. meningitidis Z2491 NC_008767.1
Neisseria meningitidis MC58 N. meningitidis MC58 N. meningitidis Z2491 NC_003112.2
Neisseria meningitidis Z2491 N. meningitidis Z2491 - NC_003116.1
Neorickettsia sennetsu Miyayama N. sennetsu Miyayama - NC_007798.1
Nitrobacter hamburgensis X14 N. hamburgensis X14 R. palustris CGA009 NC_007964.1, NC_007959.1, NC_007960.1, NC_007961.1
Nitrobacter winogradskyi Nb-255 N. winogradskyi Nb-255 R. palustris CGA009 NC_007406.1
Nitrosococcus oceani ATCC19707 N. oceani ATCC19707 - NC_007484.1, NC_007483.1
Nitrosomonas europaea N. europaea N. eutropha C71 NC_004757.1
Nitrosomonas eutropha C71 N. eutropha C71 - NC_008344.1, NC_008341.1, NC_008342.1
Nitrosospira multiformis ATCC25196 N. multiformis ATCC25196 - NC_007614.1, NC_007615.1, NC_007616.1, NC_007617.1
Novosphingobium aromaticivorans DSM12444 N. aromaticivorans DSM12444 - NC_007794.1
Paracoccus denitrificans PD1222 P. denitrificans PD1222 - NC_008686.1, NC_008687.1, NC_008688.1
Pasteurella multocida P. multocida M. succiniciproducens MBEL55E NC_002663.1
Pelobacter carbinolicus P. carbinolicus - NC_007498.2
Pelobacter propionicus DSM2379 P. propionicus DSM2379 - NC_008609.1, NC_008607.1, NC_008608.1
Photobacterium profundum SS9 P. profundum SS9 - NC_006370.1, NC_006371.1, NC_005871.1
Photorhabdus luminescens P. luminescens - NC_005126.1
Polaromonas JS666 Polaromonas JS666 - NC_007948.1, NC_007949.1, NC_007950.1
Polaromonas naphthalenivorans CJ2 P. naphthalenivorans CJ2 Polaromonas JS666 NC_008781.1, NC_008757.1, NC_008758.1, NC_008759.1, NC_008760.1, NC_008761.1, NC_008762.1, NC_008763.1, NC_008764.1
Pseudoalteromonas atlantica T6c P. atlantica T6c - NC_008228.1
Pseudoalteromonas haloplanktis TAC125 P. haloplanktis TAC125 - NC_007481.1, NC_007482.1
Pseudomonas aeruginosa P. aeruginosa P. fluorescens Pf-5 NC_002516.2
Pseudomonas aeruginosa UCBPP-PA14 P. aeruginosa UCBPP-PA14 P. fluorescens Pf-5 NC_008463.1
Pseudomonas entomophila L48 P. entomophila L48 P. fluorescens Pf-5 NC_008027.1
Pseudomonas fluorescens Pf-5 P. fluorescens Pf-5 - NC_004129.6
Pseudomonas fluorescens PfO-1 P. fluorescens PfO-1 P. fluorescens Pf-5 NC_007492.1
Pseudomonas putida KT2440 P. putida KT2440 P. fluorescens Pf-5 NC_002947.3
Pseudomonas syringae phaseolicola 1448A P. syringae phaseolicola 1448A P. fluorescens Pf-5 NC_005773.3, NC_007274.1, NC_007275.1
Pseudomonas syringae B728a P. syringae B728a P. fluorescens Pf-5 NC_007005.1
Pseudomonas syringae tomato DC3000 P. syringae tomato DC3000 P. fluorescens Pf-5 NC_004578.1, NC_004632.1, NC_004633.1
Psychrobacter arcticum 273-4 P. arcticum 273-4 P. cryohalolentis K5 NC_007204.1
Psychrobacter cryohalolentis K5 P. cryohalolentis K5 - NC_007969.1, NC_007968.1
Psychromonas ingrahamii 37 P. ingrahamii 37 - NC_008709.1
Ralstonia eutropha H16 R. eutropha H16 R. eutropha JMP134 NC_008313.1, NC_008314.1
Ralstonia eutropha JMP134 R. eutropha JMP134 - NC_007347.1, NC_007348.1, NC_007336.1, NC_007337.1
Ralstonia metallidurans CH34 R. metallidurans CH34 R. eutropha JMP134 NC_007973.1, NC_007974.1, NC_007971.1, NC_007972.1
Ralstonia solanacearum R. solanacearum - NC_003295.1, NC_003296.1
Rhizobium etli CFN42 R. etli CFN42 R. leguminosarum viciae 3841 NC_007761.1, NC_004041.2, NC_007762.1, NC_007763.1, NC_007764.1, NC_007765.1, NC_007766.1
Rhizobium leguminosarum viciae 3841 R. leguminosarum viciae 3841 - NC_008380.1, NC_008378.1, NC_008379.1, NC_008381.1, NC_008382.1, NC_008383.1, NC_008384.1
Rhodobacter sphaeroides 241 R. sphaeroides 241 - NC_007493.1, NC_007494.1, NC_007488.1, NC_007489.1, NC_007490.1, NC_009007.1, NC_009008.1
Rhodoferax ferrireducens T118 R. ferrireducens T118 - NC_007908.1, NC_007901.1
Rhodopseudomonas palustris BisA53 R. palustris BisA53 R. palustris CGA009 NC_008435.1
Rhodopseudomonas palustris BisB18 R. palustris BisB18 R. palustris CGA009 NC_007925.1
Rhodopseudomonas palustris BisB5 R. palustris BisB5 B. japonicum NC_007958.1
Rhodopseudomonas palustris CGA009 R. palustris CGA009 - NC_005296.1, NC_005297.1
Rhodopseudomonas palustris HaA2 R. palustris HaA2 R. palustris CGA009 NC_007778.1
Rhodospirillum rubrum ATCC11170 R. rubrum ATCC11170 - NC_007643.1, NC_007641.1
Rickettsia bellii RML369-C R. bellii RML369-C R. felis URRWXCal2 NC_007940.1
Rickettsia conorii R. conorii R. felis URRWXCal2 NC_003103.1
Rickettsia felis URRWXCal2 R. felis URRWXCal2 - NC_007109.1, NC_007110.1, NC_007111.1
Rickettsia prowazekii R. prowazekii R. felis URRWXCal2 NC_000963.1
Rickettsia typhi wilmington R. typhi wilmington R. felis URRWXCal2 NC_006142.1
Roseobacter denitrificans OCh 114 R. denitrificans OCh 114 - NC_008209.1, NC_008386.1, NC_008387.1, NC_008388.1, NC_008389.1
Saccharophagus degradans 2-40 S. degradans 2-40 - NC_007912.1
Salmonella enterica Choleraesuis S. enterica Choleraesuis E. coli K12 NC_006905.1, NC_006855.1, NC_006856.1
Salmonella enterica Paratypi ATCC9150 S. enterica Paratypi ATCC9150 E. coli K12 NC_006511.1
Salmonella typhi S. typhi E. coli K12 NC_003198.1, NC_003384.1, NC_003385.1
Salmonella typhi Ty2 S. typhi Ty2 E. coli K12 NC_004631.1
Salmonella typhimurium LT2 S. typhimurium LT2 E. coli K12 NC_003197.1, NC_003277.1
Shewanella ANA-3 Shewanella ANA-3 - NC_008577.1, NC_008573.1
Shewanella MR-4 Shewanella MR-4 Shewanella ANA-3 NC_008321.1
Shewanella MR-7 Shewanella MR-7 Shewanella ANA-3 NC_008322.1, NC_008320.1
Shewanella W3-18-1 Shewanella W3-18-1 Shewanella ANA-3 NC_008750.1
Shewanella amazonensis SB2B S. amazonensis SB2B - NC_008700.1
Shewanella denitrificans OS217 S. denitrificans OS217 - NC_007954.1
Shewanella frigidimarina NCIMB400 S. frigidimarina NCIMB400 Shewanella ANA-3 NC_008345.1
Shewanella oneidensis S. oneidensis Shewanella ANA-3 NC_004347.1, NC_004349.1
Shigella boydii Sb227 S. boydii Sb227 E. coli K12 NC_007613.1, NC_007608.1
Shigella dysenteriae S. dysenteriae E. coli K12 NC_007606.1, NC_007607.1
Shigella flexneri 2a S. flexneri 2a E. coli K12 NC_004337.1, NC_004851.1
Shigella flexneri 2a 2457T S. flexneri 2a 2457T E. coli K12 NC_004741.1
Shigella flexneri 5 8401 S. flexneri 5 8401 E. coli K12 NC_008258.1
Shigella sonnei Ss046 S. sonnei Ss046 E. coli K12 NC_007384.1, NC_007385.1
Silicibacter TM1040 Silicibacter TM1040 S. pomeroyi DSS-3 NC_008044.1, NC_008042.1, NC_008043.1
Silicibacter pomeroyi DSS-3 S. pomeroyi DSS-3 - NC_003911.11, NC_006569.1
Sinorhizobium meliloti S. meliloti - NC_003047.1, NC_003037.1, NC_003078.1
Sodalis glossinidius morsitans S. glossinidius morsitans E. coli K12 NC_007712.1, NC_007713.1, NC_007714.1, NC_007715.1
Sphingopyxis alaskensis RB2256 S. alaskensis RB2256 - NC_008048.1, NC_008036.1
Syntrophobacter fumaroxidans MPOB S. fumaroxidans MPOB - NC_008554.1
Syntrophus aciditrophicus SB S. aciditrophicus SB - NC_007759.1
Thiobacillus denitrificans ATCC25259 T. denitrificans ATCC25259 - NC_007404.1
Thiomicrospira crunogena XCL-2 T. crunogena XCL-2 - NC_007520.2
Thiomicrospira denitrificans ATCC33889 T. denitrificans ATCC33889 - NC_007575.1
Verminephrobacter eiseniae EF01-2 V. eiseniae EF01-2 - NC_008786.1, NC_008771.1
Vibrio cholerae V. cholerae V. vulnificus YJ016 NC_002505.1, NC_002506.1
Vibrio fischeri ES114 V. fischeri ES114 - NC_006840.1, NC_006841.1, NC_006842.1
Vibrio parahaemolyticus V. parahaemolyticus V. vulnificus YJ016 NC_004603.1, NC_004605.1
Vibrio vulnificus CMCP6 V. vulnificus CMCP6 V. vulnificus YJ016 NC_004459.2, NC_004460.1
Vibrio vulnificus YJ016 V. vulnificus YJ016 - NC_005139.1, NC_005140.1, NC_005128.1
Wigglesworthia brevipalpis W. brevipalpis - NC_004344.2, NC_003425.1
Wolbachia pipientis wMel W. pipientis wMel - NC_002978.6
Wolbachia TRS-Bmalayi Wolbachia TRS-Bmalayi W. pipientis wMel NC_006833.1
Wolinella succinogenes W. succinogenes - NC_005090.1
Xanthomonas campestris X. campestris X. campestris vesicatoria 85-10 NC_003902.1
Xanthomonas campestris 8004 X. campestris 8004 X. campestris vesicatoria 85-10 NC_007086.1
Xanthomonas campestris vesicatoria 85-10 X. campestris vesicatoria 85-10 - NC_007508.1, NC_007504.1, NC_007505.1, NC_007506.1, NC_007507.1
Xanthomonas citri X. citri X. campestris vesicatoria 85-10 NC_003919.1, NC_003921.3, NC_003922.1
Xanthomonas oryzae KACC10331 X. oryzae KACC10331 X. campestris vesicatoria 85-10 NC_006834.1
Xanthomonas oryzae MAFF311018 X. oryzae MAFF311018 X. campestris vesicatoria 85-10 NC_007705.1
Xylella fastidiosa X. fastidiosa X. campestris vesicatoria 85-10 NC_002488.3, NC_002489.3, NC_002490.1
Xylella fastidiosa Temecula1 X. fastidiosa Temecula1 X. campestris vesicatoria 85-10 NC_004556.1, NC_004554.1
Yersinia enterocolitica 8081 Y. enterocolitica 8081 E. coli K12 NC_008800.1, NC_008791.1
Yersinia pestis Antiqua Y. pestis Antiqua E. coli K12 NC_008150.1, NC_008120.1, NC_008121.1, NC_008122.1
Yersinia pestis CO92 Y. pestis CO92 E. coli K12 NC_003143.1, NC_003131.1, NC_003132.1, NC_003134.1
Yersinia pestis KIM Y. pestis KIM E. coli K12 NC_004088.1, NC_004838.1
Yersinia pestis Nepal516 Y. pestis Nepal516 E. coli K12 NC_008149.1, NC_008118.1, NC_008119.1
Yersinia pestis Mediaevails Y. pestis Mediaevails E. coli K12 NC_005810.1, NC_005813.1, NC_005814.1, NC_005815.1, NC_005816.1
Yersinia pseudotuberculosis IP32953 Y. pseudotuberculosis IP32953 E. coli K12 NC_006155.1, NC_006153.2, NC_006154.1
Zymomonas mobilis ZM4 Z. mobilis ZM4 - NC_006526.1
Phylum: Spirochaetes
Borrelia afzelii PKo B. afzelii PKo B. burgdorferi NC_008277.1, NC_008273.1, NC_008274.1, NC_008564.1, NC_008565.1, NC_008566.1, NC_008567.1, NC_008568.1, NC_008569.1
Borrelia burgdorferi B. burgdorferi - NC_001318.1, NC_000948.1, NC_000949.1, NC_000950.1, NC_000951.1, NC_000952.1, NC_000953.1, NC_000954.1, NC_000955.1, NC_000956.1, NC_000957.1, NC_001849.1, NC_001850.1, NC_001851.1, NC_001852.1, NC_001853.1, NC_001854.1, NC_001855.1, NC_001856.1, NC_001857.1, NC_001903.1, NC_001904.1
Borrelia garinii PBi B. garinii PBi B. burgdorferi NC_006156.1, NC_006128.1, NC_006129.1
Leptospira borgpetersenii Hardjo-bovis JB197 L. borgpetersenii Hardjo-bovis JB197 L. interrogans Lai NC_008510.1, NC_008511.1
Leptospira borgpetersenii Hardjo-bovis L550 L. borgpetersenii Hardjo-bovis L550 L. interrogans Lai NC_008508.1, NC_008509.1
Leptospira interrogans Copenhageni L. interrogans Copenhageni L. interrogans Lai NC_005823.1, NC_005824.1
Leptospira interrogans Lai L. interrogans Lai - NC_004342.1, NC_004343.1
Treponema denticola ATCC35405 T. denticola ATCC35405 - NC_002967.9
Treponema pallidum T. pallidum - NC_000919.1
Phylum: Thermotogae
Thermotoga maritima T. maritima - NC_000853.1
Phylum: Crenarchaeota
Aeropyrum pernix A. pernix - NC_000854.2
Hyperthermus butylicus H. butylicus - NC_008818.1
Pyrobaculum aerophilum P. aerophilum - NC_003364.1
Pyrobaculum islandicum DSM4184 P. islandicum DSM4184 P. aerophilum NC_008701.1
Sulfolobus acidocaldarius DSM639 S. acidocaldarius DSM639 - NC_007181.1
Sulfolobus solfataricus S. solfataricus - NC_002754.1
Sulfolobus tokodaii S. tokodaii - NC_003106.2
Thermofilum pendens Hrk 5 T. pendens Hrk 5 - NC_008698.1, NC_008696.1
Phylum: Euryarchaeota
Archaeoglobus fulgidus A. fulgidus - NC_000917.1
Haloarcula marismortui ATCC43049 H. marismortui ATCC43049 - NC_006396.1, NC_006397.1, NC_006389.1, NC_006390.1, NC_006391.1, NC_006392.1, NC_006393.1, NC_006394.1, NC_006395.1
Halobacterium sp Halobacterium sp - NC_002607.1, NC_001869.1, NC_002608.1
Haloquadratum walsbyi H. walsbyi - NC_008212.1, NC_008213.1
Methanothermobacter thermoautotrophicum M. thermoautotrophicum - NC_000916.1
Methanococcoides burtonii DSM6242 M. burtonii DSM6242 - NC_007955.1
Methanocaldococcus jannaschii M. jannaschii - NC_000909.1, NC_001732.1, NC_001733.1
Methanococcus maripaludis S2 M. maripaludis S2 - NC_005791.1
Methanocorpusculum labreanum Z M. labreanum Z - NC_008942.1
Methanopyrus kandleri M. kandleri - NC_003551.1
Methanosaeta thermophila PT M. thermophila PT - NC_008553.1
Methanosarcina acetivorans M. acetivorans - NC_003552.1
Methanosarcina barkeri fusaro M. barkeri fusaro M. acetivorans NC_007355.1, NC_007349.1
Methanosarcina mazei M. mazei M. acetivorans NC_003901.1
Methanosphaera stadtmanae M. stadtmanae - NC_007681.1
Methanospirillum hungatei JF-1 M. hungatei JF-1 - NC_007796.1
Natronomonas pharaonis N. pharaonis - NC_007426.1, NC_007427.1, NC_007428.1
Picrophilus torridus DSM9790 P. torridus DSM9790 - NC_005877.1
Pyrococcus abyssi P. abyssi P. furiosus NC_000868.1, NC_001773.1
Pyrococcus furiosus P. furiosus - NC_003413.1
Pyrococcus horikoshii P. horikoshii P. furiosus NC_000961.1
Thermococcus kodakaraensis KOD1 T. kodakaraensis KOD1 - NC_006624.1
Thermoplasma acidophilum T. acidophilum - NC_002578.1
Thermoplasma volcanium T. volcanium T. acidophilum NC_002689.2
Phylum: Nanoarchaeota
Nanoarchaeum equitans N. equitans - NC_005213.1
Redundant genomes are those containing a name of a representative genome ("Represented by" column).
The order of elimination obeys importance as model organisms (E. coli K12, B. subtilis), then importance by the highest number of genes having orthologs across phyla.